chapter 5 microbial metabolism

catabolism

breaking down large molecules into smaller products

anabolism

sysnthesize large molecules from smaller products of catabolism

exergonic

release energy (catabolic)

endergonic

require energy (anabolic)

oxidation-reduction reaction

any metabolic reaction involving the transfer of electrons from an electron donor to an electron acceptor

three important carrier molecules

NAD+, NADP+ and FAD

substrate level phosphorylation

involves the transfer of phosphate to ADP from another phosphorlayed organic compound. Happens in glycolysis.

oxidative phosphoylation

in which energy from redox reactions of respiration is used to attach inorganic phosphate to ADP. Happens in the ETC.

photophosphorylation

in which light energy is used to phosphorylate ADP with inorganic phosphate.

catalysts

chemicals that increase the likelihood of a reaction but are not permanently changed in the process.

enzymes

orgainc catalysts

isomerase

rearrangement of atoms within a molecule

apoenzymes

proteins that are inactive if they are not bound to a cofactor.

cofactor

inorganice ions or certain organic molecules called coenzymes

holoenzyme

apoenzyme plus cofactor that form an active enzyme

activation energy

the amount of energy needed to trigger a chemical reaction

hyperthermophiles

organisms that grow best at temps above 80 degrees celcius

optimum temp

in the human body the optimum temp is 37 degree celcius

denature

if temp. rises above a certain point the noncovalent bonds within an enzyme will break thus changing the 3 dimensional shape making it no longer functional

competitive inhibitors

a substrate that are shaped so that they will fit into the enzymes active site and thus prevent the normal substrate from binding. Can be reversed by the other substate being in high concentration.

noncompetitive inhibitors (allosteric inhibition)

do not bind to the active site but instead prevent enzymatic activity by binding to an allosteric site and thus changing the shape of the enzyme making it non longer functional.

allosteric activation

substate that binds to the allosteric site of the enzyme thus changing the shape so that another substrate will be able to bond to the enzyme

glycolysis (Embden-Meyerhof pathway)

first step in the catabolism of glucose via both respiration and fermentation

energy investment stage (glycolysis)

2 molecules of ATP is invested to phosphorylate a 6 carbon glucose and rearrange its atoms to form fructios 1 6-biphosphate

lysis stage (glycolysis)

fructose 1 6-biphosphate are cleaved into 2 3 carbon atoms that are freely convertible to the other

energy-conserving stage (glycolysis)

G3P is oxidized to pyruvic acid yielding 2 ATP molecules. DHAP is also converted to G3P and also oxidized to pyruvic acid yielding 2 ATP.

Glycolysis products

for every glucose molecule it produces 4 ATP and 2 pyruvic acid, which is only a net of 2 ATP since 2 were invested to begin the process.

cellular respiration

metabolic process that involves the complete oxidation of substrate molecules and the production of ATP by a series of redox reactions.

Krebs cycle

series of 8 enzymatically catalyzed reactions that transfer much of this stored energy to coenzymes NAD+ and FAD

feedback inhibition

method of controlling the action of enzymes in which the end-product of a series of reactions inhibits an enzyme in an earlier part of the pathway.

step 1 of Krebs

splitting of the high energy bond between acetate and coenzyme A releases energy to enable the binding of the freed 2 carbon acetate to a 4 carbon compound oxaloacetic acid, forming the 5 carbon compound citric acid.

step 2 of Krebs

the decarboxylations of the Krebs release twon molecules of carbon dixoide for each acetyl-CoA that enters

step 3&4 of Krebs

for every 2 carbon atoms that enter the cycle, two are lost into the environment.

step 5 of Krebs

4 carbon compound left give up energy to ADP making it ATP (substrate level phosphorylation)

step 6 of Krebs

electrons then transferred to FAD and FADH2

step 7 of Krebs

hydration reaction

step 8 of Krebs

NAD takes 2 electrons to make NADH

Electron transport chain

a series of redox reactions during the final stage of cellular respiration.

products of the Krebs cycle

for every 1 glucose you do the Krebs cycle twice resulting in 8 NADH, 2 ATP, 2 FADH2, CO2

ETC location

inner mitochondrial membranes of eukaryotes and in the cytosol of prokaryotes

steps of the ETC

1)their energy is used to pump protons across the membrane
2)pass the electrons to an electon acceptor
3)protons then flow through ATP synthase which synthesizes ATP 4)one molecule of ATP is generated for every 2 protons that cross the membrane.

ATP production of the ETC

Eukaryotes produce 32 ATP and Prokaryotes produce 34 ATP

flavoproteins

intergral membrane proteins in ETC

Ubiquinones

lipid-soluable nonprotein carriers of the ETC

Cytochromes

intergral proteins associated with heme, which is an iron containing, nonprotein pigmented molecule found in the hemoglobin of blood