IB Biology Chapter 7--Nucleic Acids and Proteins

Introns

Non-coding fragments of DNA.

Exons

Protein-coding fragments of DNA.

Highly repetitive sequences

Sequences of DNA in the genome which acount for 5-45% of the total genome and are not used for coding purposes.

Structural DNA

Tightly coiled DNA which does not have a coding function, and occurs around the centromere of a chromosome.

Histone

Proteins structures paired with DNA in eukaryotic cells which package DNA.

Purines

Double-ring structured nitrogenous bases; adenine and guanine

Pyrimidines

Single-ring structured nitrogenous bases; cytosine and thymine

Semiconservative Model of DNA Replication

A model of DNA replication that shows how complimentary base pairs act as a template to allow for the copying of the strand of DNA.

Leading Strand

the new continuous complementary DNA strand synthesized along the template strand in the mandatory 5' --> 3' direction

Lagging Strand

A discontinuously synthesized DNA strand that elongates in a direction away from the replication fork, because the strand runs in the 3' -->5' direction, requiring elongation to occur as Okazaki fragments which are later joined my DNA ligase.

DNA Ligase

An enzyme that eventually joins the sugar-phosphate backbones of the Okazaki fragments.

DNA Polymerase I

Enzyme which removes RNA primers and replaces them with the appropriate nucleotides during DNA replication.

DNA Polymerase III

Enzyme which is responsible for synthesizing complementary strands of DNA during DNA replication.

RNA Primer

Short segment of RNA used to initiate synthesis of a new strand of DNA during replication

Okazaki Fragment

A short segment of DNA synthesized on a template strand during DNA replication. Many Okazaki fragments make up the lagging strand of newly synthesized DNA.

Primase

An enzyme that joins RNA nucleotides to make the primer using the parental DNA strand as a template.

Helicase

An enzyme that untwists the double helix at the replication forks, separating the two parental strands and making them available as template strands during DNA replication

Transcription

The process by which a DNA sequence in a gene is copied into mRNA to be transported out of the nucleus and to the site of the ribosome for protein synthesis.

Terminator

A sequence of nucleotides that, when transcribed, causes the RNA polymerase to detach from the DNA, stopping the transcription process, and releasing the RNA transcript from the DNA strand.

A Site

Site on the ribosome which holds the tRNA carrying the next amino acid to be added to the polypeptide chain.

P Site

Site on the ribosome which holds the tRNA carrying the growing polypeptide chain.

E Site

Site on the ribosome from which tRNA that has lost its amino acid is discharged.

Translation

The process of translating genetic information coded for in messenger RNA to synthesize a specific protein at a ribosome in the cytoplasm.

Initiation Phase

Phase of translation in which a the start codon AUG begins the process of translation, and appropriate amino acids are attached to their corresponding tRNA anticodons.

Elongation Phase

Phase of translation in which involves tRNA bringing amino acids to the mRNA-ribosomal complex in the order specified by the codons of the mRNA.

Translocation Phase

Phase of translation which occurs during the elongation phase, involving the movement of the tRNAs from one ribosomal site to the next.

Termination Phase

Phase of translation in which the three stop codons appear at the A-site of the ribosome, and a protein called the release factor (which has no attached amino acid) fills the A-site. This catalyses the the hydrolysis of the bond btween the tRNA and the P-

Haemoglobin

Protein which contains iron that thransports oxygen from the lungs to all parts of the body in vertebrates.

Actin and Myosin

Proteins that interact to bring about muscle movement (contraction) in animals.

Insulin

A hormone secreted by the pancreas that aids in maintaining blood glucose level in vertebrates,

Immunoglobins

A group of proteins that act as antibodies to fight bacteria and viruses.

Amylase

A digestive enzyme that catalyses the hydrolysis of starch.

Primary Organzation

The protein structure in which the unique sequence of amino acids is held together by peptide bonds in each protein.

Secondary Organzation

The protein structure in which hydrogen bonds are formed between the oxygen from one carboxyl group of one amino acid and the hydrogen from the amino group of another. The two most common confugurations of this structure are the alpha-helix and the beta-p

Tertiary Organzation

The protein structure in whichthe polypeptide chain bends and folds over itself because of the interactions among R-groups and the peptide backbone, resulting in a definate three-dimensional conformation.

Quaternary Organzation

The protein structure which involves multiple polypeptide chains which combine to form a single structure. All bonds found in the other three levels of organization are present in this structure.

Fibrous Proteins

Proteins composed of many polypeptide chains in a long, narrow shape, usually insoluble in water, such as collagen and actin.

Globular Proteins

Proteins which are more three dimensional in their shape and are mostly water soluble, such as haemoglobin and insulin.

Polar Amino Acids

Amino acids which have hydrophyllic properties and are found in regions of proteins which are exposed to water, such as membrane proteins. These amino acids create hydrophyllic channels through which polar substances can move.

Non-Polar Amino Acids

Animo acids which are hydrophobic, found in the regions of proteins that are linked to the hydrophobic area of the cell membrane.

Anabolic Rections

Reactions which build complex molecules, are endergonic, and are biosynthetic, such as photosynthesis.

Catabolic Reactions

Reactions which break down complex molecules, are exergonic, and are degradative, such as cellular respiration.

Activation Energy

Energy which is necessary to destablize the existing chemical bonds in the substrate of an enzyme-catalysed reaction.

Competitive Inhibition

Type of inhibition where an inhibitor competes directly for the site of an enzyme so that the substrate may not come in contact with the active site and the chemical reaction rate is decreased.

Non-Competitive Inhibition

Type of inhibition where an allosteric inhibtor interacts with the enzyme to change the shape of the actice site, but does not compete directly for the active site.

End-Product Inhibition

Type of inhibtion which prevents the cell from wasting resources by making more substance than is needed. When the end product is present in sufficient quantity, the action of the first enzyme is inhibited by the end product which acts as an allosteric in