MCAT Organic Chemistry (Chapter 2): Isomers

Structural Isomers

-least similar of all isomers
-also called constitutional isomers
-only share molecular formula (molecular weights are equivalent)
-Otherwise completely different molecules, with different chemical and physical properties

Physical Properties

-characteristics of processes that don't change the composition of matter
i.e: melting point, boiling point, solubility

Chemical Properties

-determine how the molecule reacts with other molecules

Stereoisomers

-have the same chemical formula
-same atomic connectivity
-only difference among stereoisomers is how the atoms are arranged in space.

Conformational Isomers

-also called "conformers"
-most similar
-same molecules, only at different points in their natural rotation

Newman Projection

-the line of sight extends along a carbon-carbon bond axis

Staggered Conformation

-No overlap of atoms along the line of sight

Anti Staggered Conformation

-most favorable type of staggered conformation
-two groups are antiperiplanar to eachother

Gauche Staggered Conformation

-occurs when the two groups are 60* apart.
-higher energy conformation

Eclipsed Conformation

-When the atoms overlap down the line of sight
-When the two groups overlap it is called "totally eclipsed".

Ring Strain

-Unstable conditions
-Arises from three factors:
1. Angle Strain
2. Torsional Strain
3. Nonbonded Strain (steric strain)

Angle Strain

-results when bond angles deviate from their ideal values

Torsional Strain

-results when cyclic molecules must assume conformations that have eclipsed interactions.

Nonbonded Strain

-results when nonadjacent atoms or groups compete for the same space.
-Dominant source of energy in flagpole interactions of the boat conformation.

Chair Conformation

Boat Conformation

Axial

-Perpendicular to the plane of the ring

Equatorial

-parallel to the plane of the ring

Ring Flip

-atoms/groups that were equatorial become axial and vice versa

Configurational Isomers

-Can only change from one form to another by breaking and reforming covalent bonds
-Two categories:
1. geometric isomers
2. optical isomers

Geometric Isomers

-compounds that differ in the position of substituents attached to a double bond or cycloalkane

Cis

-If substituents on the double bond are on the same side

Trans

-If the two substituents on the double bond are on opposite sides.

Z (zusammen)

-If the two highest-priority substituents on each carbon are on the same side of the double bond

E (entgegen)

-if the two highest-priority substituents on each carbon are on the opposite side of the double bond

Chiral Molecules

-a molecule that is not super-imposable upon its mirror image or lacks an internal plane of symmetry

Achiral Molecules

-have mirror images that CAN be superimposed

Enantiomers

-Nonsuperimposable mirror image molecules
-opposite configuration at all chiral centers
-identical physics properties
-most of the same chemical properties
exceptions: optical activity and how they react in chiral environments

Meso compound

-A molecule with a chiral center has a plane of symmetry

Configuration

-The spatial arrangement of the atoms or groups of a stereoisomer

Relative Configuration

-a chiral molecule's configuration in relation to another chiral molecule.

Absolute Configuration

-describes the exact spatial arrangement of a chiral molecule's toms or groups, independent of other molecules

R Configuration

-clockwise
-right
-put in parenthesis and separated from the rest of the name by a dash.

S Configuration

-counterclockwise
-left
-put in parenthesis and separated from the rest of the name by a dash.

How to determine the absolute configuration at a single chiral center

1. Assign Priority by atomic #
2. Orient the molecule with the lowest priority substituent in the back.
3. Draw a circle around the molecule from highest to lowest priority
4. Determine R or S

Fischer Projections

-Horizontal lines indicate bonds that project out from the plane of the page
-Vertical lines indicate bonds going into the plane of the page
-point of intersection = carbon atom

Optically Active Compounds

-if it has the ability to rotate plane polarized light.
-One enantiomer will rotate plane-polarized light to the same extent but in the opposite direction of its mirror image

Dextrorotatory

-rotates the plane of polarized light to the right (clockwise)
-(+)
-can only be determined experimentally

Levorotatory

-rotates the plane of polarized light to the left (counterclockwise)
-(-)
-can only be determined experimentally

Specific Rotation

Racemic Mixture

-Rotations cancel each other out and no optical activity is observed.

Diastereomers

-non-mirror-image configurational isomers
-when a molecule has two or more stereogenic centers and differ at some, but NOT all of these centers.
-Therefore, diastereomers are required to have MULTIPLE chiral centers

For any molecule with n chiral centers...

There are 2^n possible stereoisomers.