Pneumococcal pneumonia (B)
Streptococcus pneumoniae +
Atypical Mycoplasmal pneumonia (B)
Mycoplasma pneumoniae -
Klebsiella pneumonia (B)
Klebsiella pneumonia -
Ornithosis/Psittacosis (B)
Chlamydia psittaci -
Legionnaire's Dx (B)
Legionella pneumoniae -
Hemophilus influeza (B)
S. aureus +
Pneumonic plague (B)
Yersinia pestis -
Hospital Acquired Pneumonia (B)
P. aeruginosa -
Tuberculosis (B)
Mycobacterium tuberculosis +
Pulmonary Dx (B)
Mycobacterium avian complex (MAC)
Pertussis (B)
Bordetella pertussis -
Diphtheria (B)
Corynebacterium diptheriae +
Rhinosinusitis / Otitis Media (B)
S. pneumoniae + H. influenza Moraxella catarrhalis - S. aureus +
Common Cold (V)
Rhinovirus Coronavirus Adenovirus
Pharyngitis (V)Bronchitis Atypical pneumonia Gastroenteritis Conjungtivitis
Adenovirus
Influenza (V)
Influenza A (humans & animals) Influenza B (humans only) Influenza C
Coronavirus Respiratory Syndromes (SARS, MERS, COVID) (V)
Coronavirus
Respiratory Syncytial Virus Infection (V)
RSV
Hantavirus Pulmonary Syndrome (V)
Hantavirus
Parainfluenza (V)
Parainfluenza Virus
AOM/ Lower Respiratory Infections (V)
Human Metapneumovirus
Pneumocystis pneumonia (F)
Pneumocystis
Aspergillosis (F)
Aspergillosis flavus
Rheumatic Fever
S. pyogenes (group A strep)
Endocarditis
Streptococcus mitis (veridans strep group)
Bubonic Plague
Yersinia pestis
infectious mononucleosis
Epstein-Barr virus (herpesvirus)
Cytomegalovirus mononucleosis
Cytomegalovirus
HIV
Human T cell lymphotropic retrovirus
Chaga's Disease
Trypanosoma cruzi
Malaria
Plasmodium (falciparum, malariae, vivax, ovale)
Schistosomiasis
Schistosoma (Blood fluke helminth)
Peptic Ulcers & Gastritis
Helicobacter pylori
Campylobacter Diarrhea
Campylobacter jejuni
Bacterial Gastroenteritis
Enterobacteriaceae
Traveler's diarrhea
E. coli
Shigeliosis
Shigella
Salmonellosis
Salmonella enteritidis
Typhoid fever
Salmonella typhi
Clostridium difficile diarrhea
C. difficile
Cholera
Vibrio cholerae
Food borne botulism
Clostridium botulism
food poisoning
Clostridium perfringens
Viral Gastroenteritis
Rotavirus / Norovirus (99%)
Infantile gastroenteritis
Rotavirus
Viral Hepatitis
Hep A,B,C,D,E
Giardiasis
Giardia lamblia (protozoa)
Cryptosporidiosis
Cryptosporidium parvum (protozoa)
amebic dysentery
Entamoeba histolytica
Beef tapeworm infection
Taenia saginata
Pork Tapeworm infection
Taenia solium
Liver fluke
Fasciola hepatica
pinworm infection
Enterobius vermicularis
Ascaris pneumonia
Ascaris lumbricoides
Whipworm infection
Trichuris trichiura
Hookworm infection
Necator americanus and Ancylostoma
UTI
Enteric bacteria E. coli (mostly) Proteus mirabilis K. pneumoniae
Leptospirosis (B)
Leptospira -
Streptococcal Acute Glomerulonephritis
Group A streptococci
Staphylococcal Toxic Shock Syndrome
S. aureus +
Bacterial Vaginosis
ANAEROBIC Gardnerella vaginalis Mycoplasma hominis
vaginal candidiasis
Candida albicans
Gonorrhea
Neisseria gonorrhoeae
Syphillis
Treponema pallidum
Chancroid
Haemophilus ducreyi
Genital Herpes
HSV 2
Genital Warts
HPV
Trichomoniasis
Trichomonas vaginalis
viral meningitis
Enterovirus
Bacterial Meningitis
N. meningitidis - S. pneumonia + H. influenzae- L. monocytogenes + S. agalactiae
Botulism
Clostridium botulinum +
Tetanus
Clostridium tetani +
Mumps
Paramyxovirus
Rabies
Lyssavirus (RNA)
Arboviral Encephalitis
Togavirus (eastern and western) Flavivirus (west nile) Bunyavirus (california)
Coccidioidomycosis
Coccidioides immitis
Toxoplasmosis
Toxoplasma gondii
spongiform encephalopathies
Infectious prion